EDAMmap documentation

A tool for mapping various text input to EDAM ontology concepts. It is designed to assist not replace a curator.

Contents:

• What is EDAMmap?
  • Background
    • bio.tools
    • EDAM
    • EDAMmap
  • Outline
  • Install
  • Quickstart
  • Repo
  • Support
  • License
• Manual
  • Setup
    • IDF
  • Input
    • CSV
  • Parameters
    • Processing
  • Results
  • EDAMmap-CLI
  • EDAMmap-Server
  • EDAMmap-Util
• API
  • /api
    • Query data
      • EDAMmap input
      • bio.tools input
    • Parameters
      • Main
      • Preprocessing
      • Fetching
      • Mapping
    • Response
      • core
      • full
    • Examples
  • Prefetching
    • /api/web
      • Request
      • Response
    • /api/doc
    • /api/pub
      • Request
      • Response
    • Example
  • Error handling
    • 400 Bad Request
    • 500 Internal Server Error
    • Examples
      • Syntax error in JSON
      • Bad parameter value
      • Some other illegal requests
• Ideas for future
  • General
  • Algorithm
    • Parameters
    • Weights
    • Measures
    • Ontology
  • Server
  • Maintenance